Protein analysis for comparability

This page has been reviewed and verified by Thomas Kofoed, PhD in Organic Chemistry
It is necessary to assess the comparability of a biopharmaceutical product before and after manufacturing changes to ensure that its safety and efficacy follow regulatory guidelines. Such changes may result from process optimization, production scale-up, product stability improvements, change in manufacturing sites, or technology transfer to another contract manufacturing organization. Comparability testing is also required after changes to commercial products and for biosimilar comparison to the originator product.
Quantitative, reproducible LC-MS analyses provide a fantastic tool for side-by-side characterization of the drug substance or product samples from different phases or batches. The results can help you determine intra-batch homogeneity and inter-batch consistency. Using LC-MS data, you can quickly and accurately verify protein expression correctness and drug substance purity. Alternatively, you can use them to identify post-translational modifications or degradation products, allowing for data-driven process optimization.
Detailed product characterization for comparability assessment may facilitate faster regulatory authority approval of CMC changes.

Benefits of comparability testing by LC-MS
Understand potential sources of batch variation
Compare side-by-side characterization of samples for process and manufacturing optimization
Evaluate batch homogeneity and consistency
Document the validity of chemistry, manufacturing, and controls (CMC) to facilitate faster review by authorities
Determine comparability of biosimilars and originators
Show that a biosimilar is highly similar to and has no clinically meaningful differences from its originator
Typical project process
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Project scope
We like to start with an online meeting to learn more about your project. Based on your needs, you will receive a draft proposal outlining the suggested analyses and expected timeframe.
Samples
After signing the final project proposal, we will contact you for details about your samples. We will inform you of an estimated report delivery date as soon as we receive your samples.
Execution
A project leader will oversee the project and send you status updates by email regularly.
The analysis varies according to the project but typically includes:
- Identification and sequence confirmation of major protein isoforms and degradants using Intact mass analysis and quantitative peptide mapping.
- Assessment of common modifications, including Asn/Gln deamidation, N-term pyroglu, C-terminal Lys truncation, M/W oxidation, glycosylation, and N-terminal variants.
- Position and amount of deamidation, oxidation, and succinimide formation.
- Glycosylation profile.
- Glycation.
Results
You will receive the report by email. The contents of the report depend highly on the analysis, but it will always include the following:
- Objectives, description of analytical procedure, results, and conclusions.
- Selected raw data, e.g., excel sheets. You may request additional raw data if needed.
Follow up
We invite your team to review the results at an online meeting upon project completion.
Curious to know more?

Whatever challenge or question you may have, we are here to help you solve it. One of our protein analysis experts will discuss the best analysis approach or method for your project by email or online meeting – without obligation.
Client stories
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Stability study – an important part of biologics license application
Characterization program for therapeutic mAbs
High-throughput antibody characterization service
Optimized HPLC analysis of peptides for clinical trials
Benefits of LC-MS comparability testing
Robust and reproducible LC-MS analysis for quantitative measurement and comparison
Combining intact mass analysis and peptide mapping provide the complete picture
Project-specific digest(s) and peptide mapping analysis
Range of chromatography techniques for purpose-specific analysis – charge variants, size, and hydrophobicity
What clients say
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Whatever protein-related challenge or question you may have, we would love to help. Our experts can help you decide on the best analytical approach for your project by email or online meeting - providing advice without obligation.






