Mapping proteins to make vaccines even safer

June 20 2014

Why is there a need for better analysis of vaccines?

Every vaccine contains small quantities of proteins. However, currently there is no analysis method capable of identifying and measuring the different protein residues. Therefore, the Danish Innovation Fund now invests six million Danish kroner in the development of a new effective LC-MS/MS analysis method for mapping residual proteins.

The vast majority of vaccines developed today are produced in genetically modified non-human cells (host cells). When you take a vaccine from the host cell, undesirable protein residues are inevitable. In some cases, they can affect our biology, and therefore, it is important to know which protein residues that may be present and in what quantities.

Head of Department Ingrid Kromann from Vaccine Development at Statens Serum Institut explains:

Even after thorough purification steps it is not possible to remove all host cell proteins 100%. It is essential to have access to analytical methods which can identify and accurately quantify the present host cell proteins. You need this valuable information in both the development of new vaccines and in the quality control of existing vaccines.


Alphalyse is one of the only companies in the world capable of analyzing Host Cell Proteins by LC-MS/MS analysis

The company Alphalyse, located in Odense, will develop the required analytical methods in close cooperation with the Protein Research Group at the University of Southern Denmark (SDU). Since 2002 Alphalyse has provided advanced protein analysis as a service to pharmaceutical and biotech companies worldwide. However, currently, it is only possible to find a few host cell proteins at a time, and only if you know what you’re looking for.

Due to the authorities’ increased requirements, all major vaccine manufacturers have begun to demand the identification and accurate quantification of host cell proteins in vaccine samples. Today, Alphalyse is one of the only companies able to do this, and only with a few selected host cell proteins. There is still a long way to meet the actual need for identifying and measuring several hundred individual host cell proteins in these very low concentrations, says co-founder and technical director at Alphalyse Ejvind Mørtz.


Close business collaboration with the international leader in proteomics

The Protein Research Group at SDU is among the founders of mass spectrometry for protein characterization. For more than 25 years it has been the international leader in proteomics. Professor Peter Højrup SDU says:

We look forward to expanding the limits for how complex protein mixtures can be analyzed with advanced LC-MS/MS. We therefore contribute with extensive experience in protein analysis. Including access to Scandinavia’s largest collection of high-tech equipment for combined liquid chromatography and mass spectrometry.

The establishment of this project is a successful example of SDU’s efforts with business collaboration. It provides a great opportunity to create more research jobs in Odense. We will work hard to achieve the ambitious goals of innovation and growth, says PhD Marie Grimstrup. For the coming 3 years she is seconded by TEK Innovation at SDU as a project manager for Alphalyse.


Contact information:

Alphalyse A/S, DK-5220 Odense SØ, COO Ejvind Mørtz, tel 40285010
Statens Serum Institut, 2300 Copenhagen S, Department Manager Ingrid Kromann, tel 22243873
University of Southern Denmark, DK-5230 Odense M, Professor Peter Højrup, tel 60112371

Budget: 11 million kroner
Foundation’s investment 6 million kroner
Duration: 3 years

Project title: Advanced LC-MS/MS analysis to provide even safer vaccines


Talk to us

Whatever protein-related challenge or question you may have, we would love to help. Our experts can help you decide on the best analytical approach for your project by email or online meeting - providing advice without obligation.

I would like an
This field is for validation purposes and should be left unchanged.